PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen09g002420.2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family C2H2
Protein Properties Length: 455aa    MW: 51012.2 Da    PI: 9.7749
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen09g002420.2genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.32.7e-055880123
                      EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                      + C++C+k F r  nL+ H r H
  Sopen09g002420.2 58 FICEICNKGFQRDQNLQLHRRGH 80
                      89*******************88 PP

2zf-C2H214.10.00014135157123
                       EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                       +kC++C+k +  +s+ k H +t+
  Sopen09g002420.2 135 WKCEKCSKKYAVQSDWKAHTKTC 157
                       58*******************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.11E-75780No hitNo description
Gene3DG3DSA:3.30.160.601.2E-55780IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.8455880IPR007087Zinc finger, C2H2
SMARTSM003550.0225880IPR015880Zinc finger, C2H2-like
PfamPF121715.3E-55880IPR022755Zinc finger, double-stranded RNA binding
PROSITE patternPS0002806080IPR007087Zinc finger, C2H2
SMARTSM00355110100130IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.3E-4123156IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576674.11E-7130155No hitNo description
SMARTSM00355130135155IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 455 aa     Download sequence    Send to blast
MMSGDLFSIH QQQHQQVLVE QNPNPKANSS SKKRRNLPDP DAEVIAISPK TLMATNRFIC  60
EICNKGFQRD QNLQLHRRGH NLPWKLKQRN KQEIVKKKVY ICPEKSCVHH DPSRALGDLT  120
GIKKHFSRKH GEKKWKCEKC SKKYAVQSDW KAHTKTCGTR EYKCDCGTLF SRKDSFITHR  180
AFCDALAEES ARITTTNNLN FNQQQQQQPV GVSQIGTSFA QDFTSMTTVN PLHQHQQKPR  240
LSLWLNQANN NMSSQSSNLF GLPDHHMVQI PSHNMFATNQ ILNPTPTTNT NTNTNTNTPA  300
TPNPPIPMSA TALLQKAAQM GSTKSTPNYF SNTFGVMHSS SSPSSNNTTQ IFNNNEIHQA  360
FAKQTEDYNQ TENILINGCP NMNSSVNSKA INLDQALLQT GGMHNQNVHF NLHNSLTRDF  420
LGMGNEGGQP FLPQELAKFA SINSAMGLSH YSTGH
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754480.0HG975448.1 Solanum pennellii chromosome ch09, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015086420.10.0PREDICTED: zinc finger protein JACKDAW-like isoform X2
SwissprotQ700D21e-126IDD10_ARATH; Zinc finger protein JACKDAW
TrEMBLK4CQE40.0K4CQE4_SOLLC; Uncharacterized protein
STRINGSolyc09g007550.2.10.0(Solanum lycopersicum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03150.16e-99C2H2-like zinc finger protein